Brain2Mesh

- A one-liner for high-quality brain mesh generation

1. Introduction
2. Software Download
3. Developmental Brain Atlas Mesh Library Download

1. Introduction

The Brain2Mesh toolbox provides a streamlined matlab function to convert a segmented MRI scan into a high-quality multi-layered tetrahedral brain/full head mesh.

The Brain2Mesh toolbox is extensively dependent on the Iso2Mesh toolbox (http://iso2mesh.sf.net) with additional dependency on MATLAB Image-Processing toolbox (imfill, ordfilt2) and 3rd party open-source toolboxes: intriangulation.m (by Adam Aitkenhead and Johannes Korsawe) and max_filter.m.

2. Software Download

Please download the latest code from our Github repository.

3. Developmental Brain Atlas Mesh Library Download

Please download the pre-generated brain atlas mesh library from our Github repository.

Currently, it contains the following meshes:

 BrainMeshLibrary
 ├── BrainWeb
 │   └── mat
 │       ├── Brainweb_Subject04.mat
 │       ├── Brainweb_Subject05.mat
 │       ├── Brainweb_Subject06.mat
 │       ├── Brainweb_Subject18.mat
 │       ├── Brainweb_Subject20.mat
 │       ├── Brainweb_Subject38.mat
 │       ├── Brainweb_Subject41.mat
 │       ├── Brainweb_Subject42.mat
 │       ├── Brainweb_Subject43.mat
 │       ├── Brainweb_Subject44.mat
 │       ├── Brainweb_Subject45.mat
 │       ├── Brainweb_Subject46.mat
 │       ├── Brainweb_Subject47.mat
 │       ├── Brainweb_Subject48.mat
 │       ├── Brainweb_Subject49.mat
 │       ├── Brainweb_Subject50.mat
 │       ├── Brainweb_Subject51.mat
 │       ├── Brainweb_Subject52.mat
 │       ├── Brainweb_Subject53.mat
 │       └── Brainweb_Subject54.mat
 ├── Neurodevelopmental
 │   └── mat
 │       ├── 3-0Months.mat
 │       ├── 4-5Months.mat
 │       ├── 6-0Months.mat
 │       ├── 7-5Months.mat
 │       ├── 9-0Months.mat
 │       ├── 2-0Years.mat
 │       ├── 2-5Years.mat
 │       ├── 3-0Years.mat
 │       ├── 5-0Years.mat 
 │       ├── 8-0Years3T.mat
 │       ├── 8-5Years3T.mat
 │       ├── 9-5Years3T.mat
 │       ├── 12-0Years3T.mat
 │       ├── 14-0Years3T.mat
 │       ├── 15-0Months.mat
 │       ├── 16-0Years3T.mat
 │       ├── 18-0Years3T.mat
 │       ├── 18-5Years3T.mat
 │       ├── 19-0Years3T.mat
 │       ├── 19-5Years3T.mat
 │       ├── 20-24Years3T.mat
 │       ├── 25-29Years3T.mat
 │       ├── 30-34Years3T.mat
 │       ├── 35-39Years.mat
 │       ├── 40-44Years.mat
 │       ├── 45-49Years.mat
 │       ├── 50-54Years.mat
 │       ├── 55-59Years.mat
 │       ├── 60-64Years.mat
 │       ├── 65-69Years.mat
 │       ├── 70-74Years.mat
 │       ├── 75-79Years.mat
 │       └── 80-84Years.mat
 └── README.md
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